MSstatsPTM is an R-based package for detecting differencially abundant post translational modifications (PTM) in shotgun mass spectrometry-bsed proteomic experiments. The package can handle a diverse range of acquisition types, including Label Free, DDA, DIA, and TMT.
This development version is only available on Github:
devtools::install_github("Vitek-Lab/MSstatsPTM", build_vignettes = TRUE)
We welcome contributions from the community. For details on how to contribute to the development of MSstatsPTM, please refer to the CONTRIBUTING file.