getTximetaBFC {tximeta} | R Documentation |
Running getTximetaBFC
will report the saved directory,
if it has been determined, or will return NULL.
Running setTximetaBFC
will ask the user to specify a
BiocFileCache directory for accessing and saving TxDb sqlite files.
Note that tximeta's BiocFileCache can be set by the environmental
variable TXIMETA_HUB_CACHE
, which will reset the cache location.
getTximetaBFC() setTximetaBFC(dir, quiet = FALSE)
dir |
the location for tximeta's BiocFileCache. can be missing
in which case the function will call |
quiet |
whether to suppress feedback message |
the directory of the BiocFileCache used by tximeta
(or nothing, in the case of setTximetaBFC
)
# getting the BiocFileCache used by tximeta # (may not be set, which uses BiocFileCache default or temp directory) getTximetaBFC() # don't want to actually change user settings so this is not run: # setTximetaBFC()