read.codeml {treeio} | R Documentation |
read baseml output
read.codeml(rstfile, mlcfile, tree = "mlc", type = "Joint")
rstfile |
rst file |
mlcfile |
mlc file |
tree |
one of 'mlc' or 'rst' |
type |
one of 'Marginal' or 'Joint' |
A treedata
object
Guangchuang Yu
rstfile <- system.file("extdata/PAML_Codeml", "rst", package="treeio") mlcfile <- system.file("extdata/PAML_Codeml", "mlc", package="treeio") read.codeml(rstfile, mlcfile)