read_hdf5 {spatialHeatmap}R Documentation

Read Data from the Shiny App Database

Description

This function is used to extract data from the Shiny App Database "data_shm.tar".

Usage

read_hdf5(file, prefix)

Arguments

file

The path of "data_shm.tar" generated by write_hdf5.

prefix

A vector of data set identifiers such as c('expr_arab', 'expr_chicken', 'df_pair'). The vector elements must come from the "data" column in the pairing table that is made when calling write_hdf5.

Value

A list of data set and/or the pairing table.

Author(s)

Jianhai Zhang jzhan067@ucr.edu; zhang.jianhai@hotmail.com
Dr. Thomas Girke thomas.girke@ucr.edu

References

SummarizedExperiment: SummarizedExperiment container. R package version 1.10.1
R Core Team (2018). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/ Hervé Pagès (2020). HDF5Array: HDF5 backend for DelayedArray objects. R package version 1.16.1.

Examples

# See examples in the function write_hdf5.

[Package spatialHeatmap version 1.2.0 Index]