slingClusterLabels {slingshot} | R Documentation |
Extract the cluster labels used by slingshot
.
slingClusterLabels(x) ## S4 method for signature 'PseudotimeOrdering' slingClusterLabels(x) ## S4 method for signature 'SlingshotDataSet' slingClusterLabels(x) ## S4 method for signature 'SingleCellExperiment' slingClusterLabels(x)
x |
an object containing |
Typically returns a matrix of cluster assignment weights
(#cells
by #clusters
). Rarely, a vector of cluster labels.
data("slingshotExample") rd <- slingshotExample$rd cl <- slingshotExample$cl pto <- slingshot(rd, cl, start.clus = '1') slingClusterLabels(pto)