seuratNormalizeData {singleCellTK} | R Documentation |
seuratNormalizeData Wrapper for NormalizeData() function from seurat library Normalizes the sce object according to the input parameters
seuratNormalizeData( inSCE, useAssay, normAssayName = "seuratNormData", normalizationMethod = "LogNormalize", scaleFactor = 10000, verbose = TRUE )
inSCE |
(sce) object to normalize |
useAssay |
Assay containing raw counts to use for normalization. |
normAssayName |
Name of new assay containing normalized data. Default
|
normalizationMethod |
selected normalization method. Default
|
scaleFactor |
numeric value that represents the scaling factor. Default
|
verbose |
Logical value indicating if informative messages should
be displayed. Default is |
Normalized SingleCellExperiment
object
data(scExample, package = "singleCellTK") ## Not run: sce <- seuratNormalizeData(sce, useAssay = "counts") ## End(Not run)