seuratICA {singleCellTK} | R Documentation |
seuratICA Computes ICA on the input sce object and stores the calculated independent components within the sce object
seuratICA(inSCE, useAssay, reducedDimName = "seuratICA", nics = 20)
inSCE |
(sce) object on which to compute ICA |
useAssay |
Assay containing scaled counts to use in ICA. |
reducedDimName |
Name of new reducedDims object containing Seurat ICA
Default |
nics |
Number of independent components to compute. Default |
Updated SingleCellExperiment
object which now contains the
computed independent components
data(scExample, package = "singleCellTK") ## Not run: sce <- seuratNormalizeData(sce, useAssay = "counts") sce <- seuratFindHVG(sce, useAssay = "counts") sce <- seuratScaleData(sce, useAssay = "counts") sce <- seuratICA(sce, useAssay = "counts") ## End(Not run)