plotDimRed {singleCellTK}R Documentation

Plot dimensionality reduction from computed metrics including PCA, ICA, tSNE and UMAP

Description

Plot dimensionality reduction from computed metrics including PCA, ICA, tSNE and UMAP

Usage

plotDimRed(
  inSCE,
  useReduction,
  showLegend = FALSE,
  xAxisLabel = NULL,
  yAxisLabel = NULL
)

Arguments

inSCE

Input SCE object

useReduction

Reduction to plot

showLegend

If legends should be plotted or not

xAxisLabel

Specify the label for x-axis. Default is NULL which will specify the label as 'x'.

yAxisLabel

Specify the label for y-axis. Default is NULL which will specify the label as 'y'.

Value

plot object

Examples

data("mouseBrainSubsetSCE", package = "singleCellTK")
plotDimRed(mouseBrainSubsetSCE, "PCA_logcounts")

[Package singleCellTK version 2.2.0 Index]