getBiomarker {singleCellTK} | R Documentation |
Given a list of genes and a SingleCellExperiment object, return the binary or continuous expression of the genes.
getBiomarker( inSCE, gene, binary = "Binary", useAssay = "counts", featureLocation = NULL, featureDisplay = NULL )
inSCE |
Input SingleCellExperiment object. |
gene |
gene list |
binary |
"Binary" for binary expression or "Continuous" for a gradient. Default: "Binary" |
useAssay |
Indicates which assay to use. The default is "counts". |
featureLocation |
Indicates which column name of rowData to query gene. |
featureDisplay |
Indicates which column name of rowData to use to display feature for visualization. |
getBiomarker(): A data.frame of expression values
getBiomarker(mouseBrainSubsetSCE, gene="C1qa")