get_treat_info {signatureSearch} | R Documentation |
Get treatment information including perturbation name, cell type and perturbation type from the reference database
get_treat_info(refdb)
refdb |
character(1), one of "lincs", "lincs_expr", "cmap" or "cmap_expr"
when using the pre-generated CMAP/LINCS databases or path to the HDF5 file
generated with the |
tibble object with 'pert', 'cell', 'pert_type' columns
refdb <- system.file("extdata", "sample_db.h5", package="signatureSearch") treat_info <- get_treat_info(refdb)