plotGCcontent {seqTools} | R Documentation |
The function creates plots on proportions of relative GC content. For each FASTQ file from wich data is contained, one separate line is plotted. A value of 0.1 at the proportion of 40 says that 0.1 % of the reads have 40 % GC content.
plotGCcontent(object, main, ...)
object |
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main |
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... |
Other arguments which are passed to the internally called plot function. |
The area under each plotted line adds up to 1.
None.
Wolfgang Kaisers
Fastqq-class
basedir <- system.file("extdata", package="seqTools") setwd(basedir) fq <- fastqq(c("g4_l101_n100.fq.gz", "g5_l101_n100.fq.gz"), k=4, probeLabel=c("g4", "g5")) # plotGCcontent(fq)