remove_outliers {scPipe} | R Documentation |
SingleCellExperiment
Removes outliers flagged by detect_outliers()
remove_outliers(sce)
sce |
a |
a SingleCellExperiment
object without outliers
data("sc_sample_data") data("sc_sample_qc") sce = SingleCellExperiment(assays = list(counts = as.matrix(sc_sample_data))) organism(sce) = "mmusculus_gene_ensembl" gene_id_type(sce) = "ensembl_gene_id" QC_metrics(sce) = sc_sample_qc demultiplex_info(sce) = cell_barcode_matching UMI_dup_info(sce) = UMI_duplication sce = detect_outlier(sce) dim(sce) sce = remove_outliers(sce) dim(sce)