SangerAlignment-class-generateReportSA {sangeranalyseR} | R Documentation |
A SangerAlignment method which generates final reports of the SangerContig instance.
## S4 method for signature 'SangerAlignment' generateReportSA(object, outputDir, includeSangerContig = TRUE, includeSangerRead = TRUE)
object |
A SangerAlignment S4 instance. |
outputDir |
The output directory of the generated HTML report. |
includeSangerContig |
The parameter that decides whether to include SangerContig level report. The value is |
includeSangerRead |
The parameter that decides whether to include SangerRead level report. The value is |
The output absolute path to the SangerAlignment's HTML file.
data("sangerAlignmentData") ## Not run: generateReportSA(sangerAlignmentData) ## End(Not run)