logoContext {riboSeqR} | R Documentation |
The findCDS function reports the immediate context of coding start. This function uses the 'seqLogo' package to produce a motif of the contexts reported.
logoContext(cds, ...)
cds |
A GRanges object containing a '$context' value which defines the 7 bases defining coding start context. |
... |
Other values to be passed to the seqLogo function. |
A matrix containing counts of the different bases observed at each position of the 7-base context.
Thomas J. Hardcastle