make_graphNEL_from_ontology_plot {ontoProc} | R Documentation |
obtain graphNEL from ontology_plot instance of ontologyPlot
make_graphNEL_from_ontology_plot(x)
x |
instance of S3 class ontology_plot |
instance of S4 graphNEL class
requireNamespace("Rgraphviz") requireNamespace("graph") cl = getCellOnto() cl3k = c("CL:0000492", "CL:0001054", "CL:0000236", "CL:0000625", "CL:0000576", "CL:0000623", "CL:0000451", "CL:0000556") p3k = ontologyPlot::onto_plot(cl, cl3k) gnel = make_graphNEL_from_ontology_plot(p3k) gnel = improveNodes(gnel, cl) graph::graph.par(list(nodes=list(shape="plaintext", cex=.8))) gnel = Rgraphviz::layoutGraph(gnel) Rgraphviz::renderGraph(gnel)