mapOneNaive {ontoProc}R Documentation

use grep or agrep to find a match for a naive token into ontology

Description

use grep or agrep to find a match for a naive token into ontology

Usage

mapOneNaive(naive, onto, useAgrep = FALSE, ...)

Arguments

naive

character(1)

onto

an instance of ontologyIndex::ontology_index

useAgrep

logical(1) if TRUE, agrep will be used

...

passed to agrep if used

Value

if a match is found, the result of grep/agrep with value=TRUE is returned; otherwise a named NA_character_ is returned

named vector, names are ontology identifiers, values are matched strings

Examples

co = ontoProc::getCellOnto()
mapOneNaive("astrocyte", co)

[Package ontoProc version 1.14.0 Index]