add_flank_to_variants {musicatk} | R Documentation |
Uses a genome object to find context and add it to the variant table
add_flank_to_variants( musica, g, flank_start, flank_end, build_table = TRUE, overwrite = FALSE )
musica |
Input samples |
g |
A BSgenome object indicating which genome reference the variants and their coordinates were derived from. |
flank_start |
Start of flank area to add, can be positive or negative |
flank_end |
End of flank area to add, can be positive or negative |
build_table |
Automatically build a table using the annotation and add |
overwrite |
Overwrite existing count table |
None it to the musica
data(musica_sbs96_tiny) g <- select_genome("19") add_flank_to_variants(musica_sbs96_tiny, g, 1, 2) add_flank_to_variants(musica_sbs96_tiny, g, -2, -1)