getModel,StatModel-method {msqrob2} | R Documentation |
Accessor functions for StatModel class
to get model
to get the parameter estimation method
to get the parameter estimates of the mean model
to get the residual degrees of freedom of the model
to get the residual variance of the model
to get the residual standard deviation of the model
to get the degrees of freedom of the empirical Bayes variance estimator
to get the empirical Bayes variance
to get the empirical Bayes standard deviation
to get the unscaled variance covariance matrix of the model parameters
## S4 method for signature 'StatModel' getModel(object) ## S4 method for signature 'StatModel' getFitMethod(object) ## S4 method for signature 'StatModel' getCoef(object) ## S4 method for signature 'StatModel' getDfPosterior(object) ## S4 method for signature 'StatModel' getVarPosterior(object) ## S4 method for signature 'StatModel' getSigmaPosterior(object) ## S4 method for signature 'StatModel' getDF(object) ## S4 method for signature 'StatModel' getVar(object) ## S4 method for signature 'StatModel' getSigma(object) ## S4 method for signature 'StatModel' getVcovUnscaled(object)
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The requested parameter of the StatModel object
data(pe) # Aggregate peptide intensities in protein expression values pe <- aggregateFeatures(pe, i = "peptide", fcol = "Proteins", name = "protein") # Fit msqrob model pe <- msqrob(pe, i = "protein", formula = ~condition) getCoef(rowData(pe[["protein"]])$msqrobModels[[1]]) getModel(rowData(pe[["protein"]])$msqrobModels[[1]]) getFitMethod(rowData(pe[["protein"]])$msqrobModels[[1]]) # Similar for the remaining accessors