importMatrix {motifStack} | R Documentation |
Import the motifs into pcm-class or pfm-class from files exported from Transfac, CisBP, and JASPAR.
importMatrix( filenames, format = c("auto", "pfm", "cm", "pcm", "meme", "transfac", "jaspar", "scpd", "cisbp", "psam"), to = c("auto", "pcm", "pfm", "pssm", "psam") )
filenames |
filename to be imported. |
format |
file format |
to |
a list of object pcm-class or pfm-class
Jianhong Ou
path <- system.file("extdata", package = "motifStack") importMatrix(dir(path, "*.pcm", full.names = TRUE))