mia-datasets {miaViz} | R Documentation |
These example data objects were prepared to serve as examples. See the details for more information.
data(col_graph) data(row_graph) data(row_graph_order)
An object of class tbl_graph
(inherits from igraph
) of length 10.
An object of class tbl_graph
(inherits from igraph
) of length 10.
An object of class tbl_graph
(inherits from igraph
) of length 10.
For *_graph
data:
“Jaccard” distances were calculated via
calculateDistance(genus, FUN = vegan::vegdist, method = "jaccard",exprs_values = "relabundance")
,
either using transposed assay data or not to calculate distances for samples
or features.
“Jaccard” dissimilarites were converted to similarities and values
above a threshold were used to construct a graph via
graph.adjacency(mode = "lower", weighted = TRUE)
.
The igraph
object was converted to tbl_graph
via
as_tbl_graph
from the tidygraph
package.