getGRangesFromMethylDiff {methylInheritance} | R Documentation |
list
of GRanges
objectsTransform a list
of methylDiff
objects into
a list
of GRanges
objects. Each methylDiff
object
represent a CpG site or region analysis done on one generation.
getGRangesFromMethylDiff( methDiff, pDiff, qvalue, type = c("all", "hyper", "hypo") )
methDiff |
a |
pDiff |
a positive |
qvalue |
a positive |
type |
One of the |
a list
of GRanges
objects, each
entry of the list
represents the differentially methylated results
for one generation (first entry = first genertation, second entry =
second generation, etc..). Each GRanges
object holds statistics
for differentially methylated regions/bases.
Pascal Belleau
## Load permutation results on sites permutationResultsFile <- system.file("extdata", "permutationResultsForSites.RDS", package="methylInheritance") permutationResults <- readRDS(permutationResultsFile) ## Transform result to GRanges resultsGR <- methylInheritance:::getGRangesFromMethylDiff(methDiff = permutationResults, pDiff = 10, qvalue = 0.01, type = "hyper")