write2file {metabCombiner} | R Documentation |
Prints a combinedTable
report to a file, specified by
file
argument. Output file has an empty line between
each separate m/z group for ease of viewing.
write2file(object, file, sep = ",")
object |
|
file |
character string naming the output file path |
sep |
Character field separator. Values within each row are separated by this character. |
no values returned
data(plasma30) data(plasma20) p30 <- metabData(plasma30, samples = "CHEAR") p20 <- metabData(plasma20, samples = "Red", rtmax = 17.25) p.comb <- metabCombiner(xdata = p30, ydata = p20, binGap = 0.0075) p.comb <- selectAnchors(p.comb, tolmz = 0.003, tolrtq = 0.3, windy = 0.02) p.comb <- fit_gam(p.comb, k = 20, iterFilter = 1) p.comb <- calcScores(p.comb, A = 90, B = 14, C = 0.5) p.comb <- labelRows(p.comb, maxRankX = 2, maxRankY = 2, remove = TRUE) ###using metabCombiner object as input write2file(p.comb, file = "plasma-combined.csv", sep = ",") ###using combinedTable report and feature data as input cTable <- cbind.data.frame(combinedTable(p.comb), featdata(p.comb)) write2file(cTable, file = "plasma-combined.txt", sep = "\t")