plotRI {iClusterPlus} | R Documentation |
A function to generate reproducibility index plot.
plotRI(cv.fit)
cv.fit |
A tune.iCluster2 object |
no value returned.
Ronglai Shen shenr@mskcc.org
Ronglai Shen, Adam Olshen, Marc Ladanyi. (2009). Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis. Bioinformatics 25, 2906-2912.
Ronglai Shen, Qianxing Mo, Nikolaus Schultz, Venkatraman E. Seshan, Adam B. Olshen, Jason Huse, Marc Ladanyi, Chris Sander. (2012). Integrative Subtype Discovery in Glioblastoma Using iCluster. PLoS ONE 7, e35236
#data(simu.datasets) #cv.fit=alist() #for(k in 2:5){ # cat(paste("K=",k,sep=""),'\n') # cv.fit[[k]]=tune.iCluster2(datasets=simu.datasets, k,nrep=2, n.lambda=8) #} ##Reproducibility index (RI) plot #plotRI(cv.fit)