plot_proportions {granulator} | R Documentation |
plot_proportions
plots the estimated cell type
proportions as computed by a given method and signature matrix.
plot_proportions(deconvoluted, method = "svr", signature = "sig1")
deconvoluted |
Output object from function |
method |
Character string with name of method to be regressed. |
signature |
Character string with name of signature to be regressed. |
Plot showing regression of estimated versus measured cell type coefficients.
Vincent Kuettel, Sabina Pfister
# load demo PBMCS data load_ABIS() # deconvolute decon <- deconvolute(m = bulkRNAseq_ABIS, sigMatrix = sigMatrix_ABIS_S0) # plot cell type proportions plot_proportions(deconvoluted = decon, method = 'svr', signature = 'sig1')