fortify.flowFrame {ggcyto} | R Documentation |
It extracts events matrices and appends the pData to it so that ggplot can use the pData for facetting.
## S3 method for class 'flowFrame' fortify(model, data, ...) ## S3 method for class 'flowSet' fortify(model, data, ...) ## S3 method for class 'ncdfFlowList' fortify(model, ...) ## S3 method for class 'GatingSetList' fortify(model, ...) ## S3 method for class 'GatingSet' fortify(model, ...)
model |
flowFrame, flowSet or GatingSet |
data |
not used. |
... |
not used. |
data.table
data.table
data.table
dataDir <- system.file("extdata",package="flowWorkspaceData") gs <- load_gs(list.files(dataDir, pattern = "gs_manual",full = TRUE)) attr(gs, "subset") <- "CD4" #must attach subset information to GatingSet object before foritfying it fortify(gs) fs <- gs_pop_get_data(gs, "CD8") fortify(fs)#fs is a flowSet/ncdfFlowSet fr <- fs[[1]] fortify(fr)#fr is a flowFrame