reports {genomes} | R Documentation |
Genome and assembly reports from the NCBI genomes FTP
reports(file, assembly = FALSE, ...)
file |
file name, if missing then the files in the FTP directory are listed |
assembly |
use ASSEMBLY_REPORTS directory, default is GENOME_REPORTS |
... |
additional options passed to |
Uses read_delim
in the readr
package to read genome or assembly reports in the genomes FTP
A list of files if file name is missing, otherwise a data.frame with class c("tbl_df", "tbl", "data.frame"). If dplyr is loaded, then printing will return the first ten rows and not the first 10,000.
Chris Stubben
See ftp://ftp.ncbi.nih.gov/genomes/GENOME_REPORTS and ftp://ftp.ncbi.nih.gov/genomes/ASSEMBLY_REPORTS
reports() ## Not run: proks <- reports("prokaryotes.txt") ## End(Not run)