computeInfRV {fishpond} | R Documentation |
InfRV
is used the Swish publication for visualization.
This function provides computation of the mean InfRV, a simple
statistic that measures inferential uncertainty.
Note that InfRV is not used in the swish
statistical method at all, it is just for visualization.
See function code for details.
computeInfRV(y, pc = 5, shift = 0.01, meanVariance)
y |
a SummarizedExperiment |
pc |
a pseudocount parameter for the denominator |
shift |
a final shift parameter |
meanVariance |
logical, use pre-computed inferential mean
and variance assays instead of |
a SummarizedExperiment with meanInfRV
in the metadata columns