prepareProteomeByUniProtWS {dagLogo} | R Documentation |
Create an object of Proteome
Class by query
the UniProt database of an organism of a given species' scientific name,
or by using peptide sequences in a fasta file or in an AAStringSet object.
prepareProteomeByUniProtWS(UniProt.ws, fasta, species = "unknown")
UniProt.ws |
An object of |
fasta |
A fasta file name or an object of |
species |
An character vector of length (1) to designate the species of the proteome |
An object of Proteome which contain protein sequence information.
Jianhong Ou
formatSequence
, buildBackgroundModel
if(interactive()){ library(UniProt.ws) availableUniprotSpecies("Drosophila melanogaster") UniProt.ws <- UniProt.ws(taxId=7227) proteome <- prepareProteomeByUniProtWS(UniProt.ws, species="Drosophila melanogaster") }