plot_rank_bias {clustifyr} | R Documentation |
Query rank bias results
plot_rank_bias(bias_df, organism = "hsapiens")
bias_df |
data.frame of rank diff matrix between cluster and reference cell types |
organism |
for GO term analysis, organism name: human - 'hsapiens', mouse - 'mmusculus' |
ggplot object of distribution and annotated GO terms
## Not run: avg <- average_clusters( mat = pbmc_matrix_small, metadata = pbmc_meta, cluster_col = "classified", if_log = FALSE ) rankdiff <- find_rank_bias( avg, cbmc_ref, query_genes = pbmc_vargenes ) qres <- query_rank_bias( rankdiff, "CD14+ Mono", "CD14+ Mono" ) g <- plot_rank_bias( qres ) ## End(Not run)