getTotalFragments {chromVAR}R Documentation

getTotalFragments

Description

getTotalFragments

Usage

getTotalFragments(object)

## S4 method for signature 'SummarizedExperiment'
getTotalFragments(object)

## S4 method for signature 'MatrixOrmatrix'
getTotalFragments(object)

Arguments

object

SummarizedExperiment, matrix, or Matrix object

Value

sum of all counts within object

Methods (by class)

See Also

getFragmentsPerSample, getFragmentsPerPeak

Examples

# Load very small example counts (already filtered)
data(mini_counts, package = "chromVAR")
total_frags <- getTotalFragments(mini_counts)

[Package chromVAR version 1.14.0 Index]