computeVariability {chromVAR} | R Documentation |
function to compute overall variability of motif sets across samples
computeVariability(object, bootstrap_error = TRUE, bootstrap_samples = 1000, bootstrap_quantiles = c(0.025, 0.975), na.rm = TRUE)
object |
output from |
bootstrap_error |
compute bootstrap confidence interval |
bootstrap_samples |
number of bootstrap samples to take |
bootstrap_quantiles |
quantiles for bootstrap |
na.rm |
remove NAs? default is true |
data.frame with columns for name, variability, bootstrap lower bound, bootstrap upper bound, raw p value, adjust p value.
# Load very small example results from computeDeviations data(mini_dev, package = "chromVAR") variability <- computeVariability(mini_dev)