plotAllTracks {cellmigRation}R Documentation

A 2D rose-plot

Description

Plotting the trajectory data of all cells.

Usage

plotAllTracks(
  object,
  Type = "l",
  FixedField = TRUE,
  export = FALSE,
  ExpName = NULL
)

Arguments

object

CellMig class object, which is a list of data frames resulted from the PreProcessing.

Type

has to be one of the following: c("p", "l", "b", "o") "p": Points; "l": Lines; "b": Both; "o": Both "overplotted".

FixedField

logical(1) Allows generating a plot with fixed field 800um x 800um. Default is TRUE.

export

if 'TRUE' (default), exports plot to JPG file

ExpName

string, name of the experiment. Can be NULL

Details

The visualization shows centered trajectories where the starting point of each track is located at the origin of the coordinate system (X=0,Y=0).

Value

A 2D rose-plot showing the tracks of all cells.

Author(s)

Salim Ghannoum salim.ghannoum@medisin.uio.no

References

https://www.data-pulse.com/dev_site/cellmigration/

Examples

rmTD <- get(data(preProcCellMig))
plotAllTracks(object=rmTD, Type="l", FixedField=TRUE,export=FALSE)


[Package cellmigRation version 1.0.0 Index]