go.results.to.latex {cellTree} | R Documentation |
Outputs or writes result tables of Gene Ontology enrichment testing in LaTeX format.
go.results.to.latex(go.results, tex.file.name = "go_terms.tex", topic.colors = rainbow(length(go.results$all)))
go.results |
GO Enrichment result list object, such as returned by |
tex.file.name |
String (optional). If not |
topic.colors |
RGB colour vector (optional). Colors to use for each topic. |
GO enrichment results in LaTeX format
# Load pre-computed LDA model for skeletal myoblast RNA-Seq data from HSMMSingleCell package: data(HSMM_lda_model) # Load GO mapping database for 'homo sapiens': library(org.Hs.eg.db) # Compute GO enrichment sets for each topic: go.results = compute.go.enrichment(HSMM_lda_model, org.Hs.eg.db, bonferroni.correct=TRUE) # Output LaTeX tables for GO results latex.table = go.results.to.latex(go.results, tex.file.name='go_results.tex') # [Optional] compile LaTeX to PDF (need to have LaTeX binaries installed): library('tools') texi2pdf('go_results.tex') library('Biobase') openPDF('go_results.pdf')