newick {ccfindR}R Documentation

Generate Newick format tree string from tree list object

Description

Generate Newick format tree string from tree list object

Usage

newick(tree, parent = "1.1", string = "")

Arguments

tree

Tree list object from build_tree

parent

Parent ID

string

Newick string of parent tree

Value

String of newick tree

Examples

set.seed(1)
x <- simulate_whx(nrow=50,ncol=100,rank=5)
s <- scNMFSet(x$x)
s <- vb_factorize(s,ranks=seq(2,8),nrun=5)
tree <- build_tree(s,rmax=5)
nw <- newick(tree=tree)
nw

[Package ccfindR version 1.12.0 Index]