processDataBCR {bnem} | R Documentation |
Produce the application data from the BCR paper of Pirkl, et al., 2016, Bioinformatics. Raw data is available at https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE68761
processDataBCR(path = "", combsign = FALSE)
path |
path to the CEL.gz/Cel files |
combsign |
if TRUE includes all covariates in ComBat analysis to estimate batch effects. |
list with the full foldchanges and epxression matrix, a reduced foldchange matrix and the design matrix for the computations
Martin Pirkl
## Not run: processDataBCR() ## End(Not run) data(bcr)