simplifySampleNames {biscuiteer} | R Documentation |
Tries using the longest common subsequence to figure out what can be dropped. Usually used for VCF columns.
simplifySampleNames(x)
x |
A SummarizedExperiment-derived object, or a character vector |
The input object, but with simplified sample names
orig_bed <- system.file("extdata", "MCF7_Cunha_chr11p15.bed.gz", package="biscuiteer") orig_vcf <- system.file("extdata", "MCF7_Cunha_header_only.vcf.gz", package="biscuiteer") bisc <- readBiscuit(BEDfile = orig_bed, VCFfile = orig_vcf, merged = FALSE) bisc <- simplifySampleNames(bisc)