normalizeLoci.SNP {beadarraySNP} | R Documentation |
Perform locus normalization on Illumina Golden Gate bead arrays
normalizeLoci.SNP(object, method=c("normals","paired","alleles"), NorTum="NorTum", Gender="Gender", Subject="Subject", normalizeTo=2, trig=FALSE)
object |
|
method |
character. If |
NorTum |
logical or character vector or name of column in |
Gender |
logical or character vector or name of column in |
Subject |
factor or name of or column in |
normalizeTo |
|
trig |
Logical, use geometric distance of intensity. Otherwise use addition of intensities |
This function is usually performed in the last step of normalization in order to obtain calculated copy numbers.
This function returns an SnpSetIllumina
object.
Jan Oosting
SnpSetIllumina
,normalizeWithinArrays.SNP
,
normalizeBetweenAlleles.SNP
data(chr17.260) data.nrm<-normalizeLoci.SNP(chr17.260)