plotAlevinQuant {alevinQC}R Documentation

Panel of plots with quantification summary statistics

Description

Panel of plots with quantification summary statistics

Usage

plotAlevinQuant(
  cbTable,
  colName = "inFinalWhiteList",
  cbName = "final whitelist"
)

Arguments

cbTable

data.frame (such as the cbTable returned by readAlevinQC) with collapsed barcode frequencies, the total UMI count and the number of detected genes for each cell.

colName

Character scalar giving the name of a logical column of cbTable to use for coloring the points.

cbName

Character scalar giving the name of the set of barcodes defined by colName, used for labelling the plot legend.

Value

A ggplot object

Author(s)

Charlotte Soneson

Examples

alevin <- readAlevinQC(system.file("extdata/alevin_example_v0.14",
                                   package = "alevinQC"))
plotAlevinQuant(alevin$cbTable, colName = "inFinalWhiteList",
                cbName = "final whitelist")


[Package alevinQC version 1.8.0 Index]