plotAlevinKneeRaw {alevinQC}R Documentation

Knee plot of raw cell barcode frequencies

Description

Plot the raw cell barcode frequencies in decreasing order, and indicate a predetermined breakpoint (indicating barcodes included in the original whitelist) using color as well as a label.

Usage

plotAlevinKneeRaw(cbTable)

Arguments

cbTable

data.frame with raw barcode frequencies (such as the cbTable returned by readAlevinQC).

Value

A ggplot object

Author(s)

Charlotte Soneson

Examples

alevin <- readAlevinQC(system.file("extdata/alevin_example_v0.14",
                                   package = "alevinQC"))
plotAlevinKneeRaw(alevin$cbTable)


[Package alevinQC version 1.8.0 Index]