.plotRecapture {abseqR}R Documentation

Plots capture-recapture

Description

Plots the percent of recapture clonotypes (on the y-axis) drawn from a repeated (with replacement) sample size on the x axis. The percentage of recaptured clonotypes is averaged over 5 recapture rounds.

Usage

.plotRecapture(files, sampleNames, regions = c("CDR3", "V"))

Arguments

files

list type. List of _cdr_v_recapture.csv.gz files.

sampleNames

vector type. A vector of strings each representing the name of samples in files.

regions

vector type. A vector of strings, regions to be included in the plot. defaults to c("CDR3", "V")

Value

ggplot2 object


[Package abseqR version 1.10.0 Index]