.plotPrimerIntegrity {abseqR} | R Documentation |
category
and
5' or 3' pend
Plots the distribution of primer integrity for a given category
and
5' or 3' pend
.plotPrimerIntegrity(primerIntegrity, pend, category, primerDirectories, sampleNames, primerOut, combinedNames, mashedNames, .save = TRUE)
primerIntegrity |
string. One of "stopcodon", "integrity", "indelled", "indel_pos" |
pend |
string, either 3 or 5 (primer end) |
category |
string, either "all", "productive", or "outframe" |
primerDirectories |
string type. Path to primer analysis directory |
sampleNames |
vector type. 1-1 with primerDirectories |
primerOut |
string type. output directory |
combinedNames |
string type. Title friendly "combined" sample names |
mashedNames |
string type. File friendly "mashed-up" sample names |
.save |
logical type. Save Rdata? |
None