EntrezGene2GO {ViSEAGO} | R Documentation |
Store the available species and current GO annotations from the gene2go.gz nfile avalable at NCBI EntrezGene ftp.
EntrezGene2GO()
This function downloads the gene2go.gz file from EntrezGene ftp which contains available organisms (taxid) with the corresponding GO annotations.
a genomic_ressource-class
object required by annotate
.
Matt Dowle and Arun Srinivasan (2017). data.table: Extension of 'data.frame'. R package version 1.10.4. https://CRAN.R-project.org/package=data.table.
Eric Sayers (2013). Entrez Programming Utilities Help.
#' Henrik Bengtsson (2016). R.utils: Various Programming Utilities. R package version 2.5.0. https://CRAN.R-project.org/package=R.utils.
Maglott, D, Ostell, J, Pruitt, KD, Tatusova, T (2011). Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res., 39, Database issue:D52-7.
Other genomic_ressource:
Bioconductor2GO()
,
Custom2GO()
,
Ensembl2GO()
,
Uniprot2GO()
,
annotate()
,
available_organisms()
,
genomic_ressource-class
,
taxonomy()
## Not run: # Download EntrezGene available organisms GO annotations EntrezGene<-ViSEAGO::EntrezGene2GO() ## End(Not run)