pkgdiagram {ViSEAGO} | R Documentation |
This function build the ViSEAGO package diagram available displayed in the vignette.
pkgdiagram(x = c("white", "white", "white", "white", "white"))
x |
rectangles colors for the five subgraphs with all white by defaults |
This function use DiagrammeR package grViz
to display the ViSEAGO methods diagram with colored or not subgraphs rectangles.
an html diagram
Knut Sveidqvist, Mike Bostock, Chris Pettitt, Mike Daines, Andrei Kashcha and Richard Iannone (2017). DiagrammeR: Create Graph Diagrams and Flowcharts Using R. R package version 0.9.0. https://CRAN.R-project.org/package=DiagrammeR.
# print diagram without focus ViSEAGO::pkgdiagram(x=c("white","white","white","white","white")) # print diagram with focus one the gene list ViSEAGO::pkgdiagram(x=c("black","white","white","white","white")) # print diagram with a focus on the annotation step ViSEAGO::pkgdiagram(x=c("white","black","white","white","white")) # print diagram with a focus on the enrichment step ViSEAGO::pkgdiagram(x=c("white","white","black","white","white")) # print diagram with a focus on the Semantic Similarity step ViSEAGO::pkgdiagram(x=c("white","white","white","black","white")) # print diagram with focus on the visualization step ViSEAGO::pkgdiagram(x=c("white","white","white","white","black"))