createSummarizedExperiment {TSRchitect} | R Documentation |
createSummarizedExperiment
creates and reutrns
a SummarizedExperiment object from the tag counts on a selected
TSR dataset.
createSummarizedExperiment( experimentName, tsrSetType = "merged", tsrSet = 1, samplePrefix ) ## S4 method for signature 'tssObject,character,numeric,character' createSummarizedExperiment( experimentName, tsrSetType = "merged", tsrSet = 1, samplePrefix )
experimentName |
an S4 object of class tssObject containing information in slot @tssTagData |
tsrSetType |
specifies the TSR set to be converted into a SummarizedExperiment object. Options are "replicates" or "merged". (character) |
tsrSet |
number of the dataset to be processed (numeric). |
samplePrefix |
the prefix (or prefixes) that match the sample identifiers in the tsrData column. (character) |
a summarizedExperiment object from the specified TSR data set that is to be written to your working directory.
For more information on the SummarizedExperiment class, please visit https://bioconductor.org/packages/release/bioc/vignettes/SummarizedExperiment/inst/doc/SummarizedExperiment.html
load(system.file("extdata", "tssObjectExample.RData", package="TSRchitect")) createSummarizedExperiment(tssObjectExample, tsrSetType="merged", tsrSet=1, samplePrefix=c("sample1","sample2"))