inputToTSS {TSRchitect} | R Documentation |
inputToTSS
extracts TSS information from each
attached .bam or .bed file in a tssObject object
inputToTSS(experimentName) ## S4 method for signature 'tssObject' inputToTSS(experimentName)
experimentName |
an S4 object of class tssObject with bam files loaded |
produces a GRangesList containing separate GRanges objects for each .bam file contained within experimentName, placing them them in the returned tssObject.
An example similar to the one provided can be found in the vignette (/inst/doc/TSRchitect.Rmd).
load(system.file("extdata", "tssObjectExample.RData", package="TSRchitect")) tssObjectExample <- inputToTSS(experimentName=tssObjectExample)