detTSR {TSRchitect} | R Documentation |
An internal function, which is invoked using the user-level function determineTSR that identifies TSRs from the selected tssSet (Internal function)
detTSR(experimentName, tssSetType, tssSet = 1, tagCountThreshold, clustDist) ## S4 method for signature 'tssObject,character,numeric,numeric,numeric' detTSR( experimentName, tssSetType, tssSet = 1, tagCountThreshold = 1, clustDist )
experimentName |
- a S4 object of class tssObject containing information in slot tssTagData |
tssSetType |
- specifies the set to be clustered. Options are "replicates" or "merged" |
tssSet |
- number of the dataset to be analyzed |
tagCountThreshold |
- number of TSSs required at a given position |
clustDist |
- maximum distance of TSSs between two TSRs (in base pairs) |
via the user-level function determineTSR, creates a list of GenomicRanges objects containing TSR positions in slot 'tsrData' on the tssObject object