tppDefaultTheme {TPP} | R Documentation |
Default theme to be passed to the gplots produced by the TPP package.
tppDefaultTheme()
Internally, the theme is used as an argument for the function
ggplot2::theme_set
in order specify the appearance of the melting curve plots.
The specified plot properties include bold font and increased font size for axis labels and title, as well as a 90 degree angle for y axis labels.
ggplot theme with default settings for melting plot appearance.
# Import data: data(hdacTR_smallExample) tpptrData <- tpptrImport(configTable=hdacTR_config, data=hdacTR_data) # Obtain template with default settings: normRequirements <- tpptrDefaultNormReqs() print(normRequirements) # Relax filter on the 10th fold change column for # normalization set production: normRequirements$fcRequirements[3,3] <- 0.25 # Perform normalization: tpptrNorm <- tpptrNormalize(data=tpptrData, normReqs=)