tppccrResultTable {TPP} | R Documentation |
tppccrResultTable
summarizes the
outcomes of a TPP-CCR study in a results table and includes quality information
about the estimated dose response curves.
tppccrResultTable(data, r2Cutoff = 0.8)
data |
list of expressionSet objects containing protein fold changes, as well as fitted curve parameters. |
r2Cutoff |
quality criterion on dose response curve fit. @details If |
A data frame in which the results are stored row-wise for each protein, together with the original annotation from the input files.
tppccrCurveFit
,tppccrPlotCurves
data(hdacCCR_smallExample) tppccrData <- tppccrImport(configTable=hdacCCR_config, data=hdacCCR_data) tppccrNorm <- tppccrNormalize(data=tppccrData) tppccrTransformed <- tppccrTransform(data=tppccrNorm) tppccrFitted <- tppccrCurveFit(data=tppccrTransformed, nCores=1) tppccrResults <- tppccrResultTable(data=tppccrFitted) subset(tppccrResults, passed_filter_Panobinostat_1 & passed_filter_Panobinostat_2)