ancestryData {Summix}R Documentation

Example allele frequency data

Description

reference data is 1000 Genomes and NAM. 1000 Genomes data was downloaded from ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/ on May 31, 2018 The IAM Affymetrix 6.0 data were downloaded from ftp.1000genomes.ebi.ac.uk/vol1/ftp/technical/working/20130711_native_american_admix_train (data accessed October 2018) and had been previously harmonized with the 1000 Genomes data. Observed data is from gnomAD. gnomAD v2 data was downloaded from https://gnomad.broadinstitute.org/downloads on Oct. 11, 2018

Usage

data(ancestryData)

Format

Chromosome, SNP, base pair, reference and alternate alleles, reference allele frequencies, observed allele frequencies

Examples

data("ancestryData")

[Package Summix version 1.0.3 Index]