sgraph-methods {SplicingGraphs} | R Documentation |
Extract the splicing graph for a given gene from a SplicingGraphs object and return it as a plottable graph-like object.
sgraph(x, keep.dup.edges=FALSE, tx_id.as.edge.label=FALSE, as.igraph=FALSE) ## PLotting: ## S4 method for signature 'SplicingGraphs,missing' plot(x, y, ...) slideshow(x)
x |
TODO |
keep.dup.edges |
If |
tx_id.as.edge.label |
Whether or not to use the transcript ids as edge labels. |
as.igraph |
TODO |
y |
TODO |
... |
Additional arguments. |
TODO
TODO
H. Pagès
This man page is part of the SplicingGraphs package.
Please see ?`SplicingGraphs-package`
for an overview of the
package and for an index of its man pages.
example(SplicingGraphs) # create SplicingGraphs object 'sg' sg ## 'sg' has 1 element per gene and 'names(sg)' gives the gene ids. names(sg) graphA <- sgraph(sg["geneA"], tx_id.as.edge.label=TRUE) if (interactive()) { ## Edges are labeled with the transcript ids (or names), in blue. ## The orange arrows are edges corresponding to exons: plot(graphA) ## Note that plot() works directly on a SplicingGraphs object of ## length 1: plot(sg["geneB"]) ## Slideshow of the graphs: slideshow(sg) }