writeUniqueProfileSpecificResult {SpeCond}R Documentation

Write the specific profiles from the SpeCond analysis

Description

Produces a text file with the unique specific profiles among the conditions detected by the SpeCond analysis.

Usage

writeUniqueProfileSpecificResult(L.specific.result, file.name.unique.profile =
 "specific.unique_profile.txt", full.list.gene = FALSE)

Arguments

L.specific.result

the L.specific.result list of the included in the result of the main SpeCond function: generalResult$specificResult$L.specific.result

file.name.unique.profile

the name of the produced file containing the gene's profiles

full.list.gene

If TRUE, the last column correspond to the gene's names which have the profile described in the row

Author(s)

Florence Cavalli, florence@ebi.ac.uk

See Also

SpeCond, getProfile, writeSpeCondResult, writeGeneResult

Examples

library(SpeCond)
data(expressionSpeCondExample)
##Perform the condition specific detection analysis with SpeCond()
generalResult=SpeCond(expressionSpeCondExample, 
  param.detection=NULL, multitest.correction.method="BY", prefix.file="E", 
  print.hist.pv=TRUE, fit1=NULL, fit2=NULL, specificOutlierStep1=NULL)
specificResult=generalResult$specificResult

##write the result file
writeUniqueProfileSpecificResult(L.specific.result=specificResult$L.specific.result,
  file.name.unique.profile="Example_specific_unique_profile.txt", full.list.gene=FALSE)

[Package SpeCond version 1.46.0 Index]