runErrorModel {SpatialDecon}R Documentation

Apply error model to estimate technical SD from raw counts

Description

Based on raw counts, uses past data to estimate each raw count's log-scale SD from technical noise. Specifies different error models for different platforms.

Usage

runErrorModel(counts, platform = "general")

Arguments

counts

vector or matrix of raw counts

platform

String specifying which platform was used to create "rawCounts". Default to "dsp". Other options include "ncounter", "rsem" and "quantile".

Value

a matrix of log2-scale SDs


[Package SpatialDecon version 1.2.0 Index]