chromWithPAR {SeqVarTools} | R Documentation |
Flag single nucleotide variants
## S4 method for signature 'SeqVarGDSClass' chromWithPAR(gdsobj, genome.build=c("hg19", "hg38"))
gdsobj |
A |
genome.build |
A character sting indicating genome build. |
The pseudoautosomal region (PAR) should be treated like the autosomes for purposes of calculating allele frequency. This method returns a vector where sex chromosome variants are labeled wither "X", "Y", or "PAR".
A character vector of chromosome, with values "PAR" for the pseudoautosomal region.
Stephanie Gogarten
https://www.ncbi.nlm.nih.gov/grc/human