load_mart {SWATH2stats} | R Documentation |
This function establishes a connection to a biomart database.
load_mart(species, ensembl.path = "www.ensembl.org", mart, verbose = FALSE)
species |
The species of the protein identifiers in the term used by biomaRt (e.g. "hsapiens_gene_ensembl", "mmusculus_gene_ensembl", "drerio_gene_ensembl", etc.) |
ensembl.path |
Ensembl host to connect to. Default: www.ensembl.org |
mart |
The type of mart (e.g. "ENSEMBL_MART_ENSEMBL", etc.) |
verbose |
print a summary of the ensembl connection. |
Connection for performing biomart queries.
Peter Blattmann
{ data_table <- data.frame(Protein = c("Q01581", "P49327", "2/P63261/P60709"), Abundance = c(100, 3390, 43423)) mart <- convert_protein_ids(data_table) }