genQC {Repitools} | R Documentation |
A series of quality control plots for sequencing data are made.
## S4 method for signature 'character' genQC(qc.data, ...) ## S4 method for signature 'SequenceQCSet' genQC(qc.data, expt = "Experiment")
qc.data |
A vector of character strings, each containing an absolute path
to an RData file of a |
expt |
The names of the experiments which the lanes are about. |
... |
The |
qc.data
can be named, in which case this gives the names of the lanes used
in the plotting. Otherwise the lanes will be given the names "Lane 1"
,
"Lane 2"
, ..., "Lane n"
.
The function is called for its output. The output is multiple pages, so the pdf device should be called before this function is.
Dario Strbenac
FastQC: http://www.bioinformatics.bbsrc.ac.uk/projects/fastqc/
## Not run: qc.files <- list.files(qc.dir, "QC.*RData", full.names = TRUE) genQC(qc.files, "My Simple Experiment") ## End(Not run)