reexports {RegEnrich} | R Documentation |
These objects are imported from other packages. Follow the links below to see their documentation.
# library(RegEnrich) data("Lyme_GSE63085") data("TFs") data = log2(Lyme_GSE63085$FPKM + 1) colData = Lyme_GSE63085$sampleInfo data1 = data[seq(2000), ] design = model.matrix(~0 + patientID + week, data = colData) # Initializing a 'RegenrichSet' object object = RegenrichSet(expr = data1, colData = colData, method = 'limma', minMeanExpr = 0, design = design, contrast = c(rep(0, ncol(design) - 1), 1), networkConstruction = 'COEN', enrichTest = 'FET') # Using %>% object %>% regenrich_diffExpr()