getEntities {ReactomeContentService4R}R Documentation

PhysicalEntity queries

Description

This method retrieves instances related to PhysicalEntity.

Usage

getEntities(
  id,
  retrieval = c("subunits", "complexes", "componentOf", "otherForms"),
  resource = "Reactome",
  subunitsExcludeStructures = FALSE
)

Arguments

id

stable or db id of a Reactome PhysicalEntity, or id from resources other than Reactome

retrieval

entities to be retrieved, including "subunits", "complexes", "componentOf", "otherForms"

resource

resource other than Reactome, e.g. UniProt, Ensembl

subunitsExcludeStructures

whether contained Complexes and EntitySets are excluded when retrieving "subunits"

Details

Details on options of retrieval arg:

Value

a dataframe containing requested information

See Also

Other getContent: getEventsHierarchy(), getOrthology(), getParticipants(), getPathways(), getPerson(), getSchemaClass(), getSpecies(), query()

Examples

getEntities("R-HSA-5674003", retrieval="subunits")
getEntities("P00533", retrieval="complexes", resource="UniProt")

[Package ReactomeContentService4R version 1.0.0 Index]