nonReactomeId {ReactomeContentService4R} | R Documentation |
Mappings between non-Reactome identifiers and Reactome objects.
map2RefEntities(external.id) map2Events(external.id, resource, species, mapTo = c("pathways", "reactions")) event2Ids(event.id)
external.id |
an id from external dabatases, e.g. ChEBI, UniProt |
resource |
database name other than Reactome (e.g. UniProt, GeneCards) |
species |
name or taxon id or dbId or abbreviation of species |
mapTo |
retrieve Pathways or Reactions where an identifier can be mapped to |
event.id |
a stable or db id of an Event (Pathways and Reactions) |
Descriptions of functions:
map2RefEntities maps a non-Reactome id to ReferenceEntities that store the given external id
map2Events fetches Events related to a given non-Reactome id
event2Ids gets all non-Reactome ids associated with a given Event
a list of ReferenceEntity information
a dataframe of Events associated with the given id
non-Reactome ids associated with a given Event
## Not run: map2RefEntities("15377") #ChEBI id ## End(Not run) map2Events("Q7Z569", resource="GeneCards", species="human", mapTo="reactions") event2Ids("R-HSA-69541")