tnsGet,TNS-method {RTNsurvival} | R Documentation |
Get information from individual slots in a TNS object and any available results from a previous analysis.
## S4 method for signature 'TNS' tnsGet(tns, what)
tns |
A TNS object. |
what |
A string specifying what should be retrieved from the object. Options: 'status','survivalData', 'regulonActivity', 'TNI', 'para', 'kmTable', 'kmFit', 'coxTable', 'coxFit', 'kmInteractionTable', 'kmInteractionFit', 'coxInteractionTable', 'coxInteractionFit', and 'regulatoryElements'. |
Content from slots in the TNS object.
# load survival data data(survival.data) # load TNI-object data(stni, package = "RTN") stns <- tni2tnsPreprocess(stni, survivalData = survival.data, keycovar = c('Grade','Age'), time = 1, event = 2) stns <- tnsGSEA2(stns) regulonActivity <- tnsGet(stns, 'regulonActivity')