getBroadSubtypes {RTCGAToolbox} | R Documentation |
Obtain the mRNA expression clustering results from the Broad Institute for a specific cancer code (see getFirehoseDatasets).
getBroadSubtypes(dataset, clust.alg = c("CNMF", "ConsensusPlus"))
dataset |
A TCGA cancer code, e.g. "OV" for ovarian cancer |
clust.alg |
The selected cluster algorithm, either "CNMF" or "ConsensusPlus" (default "CNMF") |
A data.frame
of cluster and silhouette values
Ludwig Geistlinger
co <- getBroadSubtypes("COAD", "CNMF") head(co)