FirehoseGISTIC-class {RTCGAToolbox} | R Documentation |
An S4 class to store processed copy number data. (Data processed by using GISTIC2 algorithm)
## S4 method for signature 'FirehoseGISTIC' isEmpty(x) ## S4 method for signature 'FirehoseGISTIC' updateObject(object, ..., verbose = FALSE)
x |
A FirehoseGISTIC class object |
object |
A |
... |
additional arguments for updateObject |
verbose |
logical (default FALSE) whether to print extra messages |
isEmpty
: check whether the FirehoseGISTIC object has
data in it or not
updateObject
: Update an old FirehoseGISTIC object to
the most recent API
Dataset
Cohort name
AllByGene
A data frame that stores continuous copy number
ThresholdedByGene
A data frame for discrete copy number data
Peaks
A data frame storing GISTIC peak data. See getGISTICPeaks.