createRNAinteractFromFiles {RNAinteract} | R Documentation |
Reads text files with annotation, query and template design, and data. Creates a RNAinteract object.
createRNAinteractFromFiles(name = "anonymous", filePlatelist = "Platelist.txt", fileReagents = "Reagents.txt", fileTargets = "Targets.txt", fileTemplateDesign = "TemplateDesign.txt", fileQueryDesign = "QueryDesign.txt", path = ".", pdim = NULL, Transformation = "log2")
name |
A name for the screen. |
filePlatelist |
The filename of the text file containing the plate list. |
fileReagents |
The filename of the text file containing the reagent annotation. |
fileTargets |
The filename of the text file containing the target annotation. |
fileTemplateDesign |
The filename of the text file containing the template design. |
fileQueryDesign |
The filename of the text file containing the query design. |
path |
The system directory were the textfiles |
pdim |
The dimensions of the multi-well plates (e.g. |
Transformation |
The transformation that is applied to the data. All calculations are done on additive scale. |
See vignette("RNAinteract") for an example how to create an RNAinteract object.
An object of class RNAinteract
.
Bernd Fischer
~put references to the literature/web site here ~
RNAinteract-package
, createRNAinteract
, createCellHTSFromFiles