normalizeMainEffectQuery {RNAinteract}R Documentation

normalize query main effect

Description

Normalize for a time effect of the query genes.

Usage

normalizeMainEffectQuery(sgi, batch = NULL, time = NULL)

Arguments

sgi

An object of class RNAinteract.

batch

batch is a vector if integers with length equal to the number of queries. It assigns each query to a batch. Within each batch a linear regression is estimated assuming a linear effect between the order of queries and the main effects.

time

batch is a vector of numbers. A linear regression is estimated fitting the main effect as a function of the time.

Details

Normalizing the query main effect does not influence the estimation of the pairwise interaction term.

Value

An object of class RNAinteract.

Author(s)

Bernd Fischer

See Also

RNAinteract-package

Examples

data("sgi")
sgi <- normalizeMainEffectQuery(sgi)

[Package RNAinteract version 1.40.0 Index]