getAssayDataOfStudies {RImmPort} | R Documentation |
Get specific assay data of one or more studies from the ImmPort database
getAssayDataOfStudies(study_ids, assay_type)
study_ids |
List of study indentifiers |
assay_type |
Assay Type |
a list of 1) domain data of specicifc assay technology and 2) any supplemental domain data of the studies
Ravi Shankar
library(DBI) library(sqldf) studies_dir <- system.file("extdata", "ImmPortStudies", package = "RImmPort") db_dir <- file.path(studies_dir, "Db") sqlite_conn <- dbConnect(SQLite(), dbname=file.path(db_dir, "ImmPort.sqlite")) setImmPortDataSource(sqlite_conn) elispot_l <- getAssayDataOfStudies("SDY139", "ELISPOT") if (length(elispot_l) > 0) names(elispot_l) head(elispot_l$zb_df)